Release History
Version 0.2.5
Version 0.2.4
Support the input of one or multiple genes trends to initialize cell time, see config.py, parameter self.IROOT
Re-formulate the structure of configuration file
Fixed bugs on progress bar
Version 0.2.3
Change threshold for self.AGENES_R2
Version 0.2.2
Add benchmarking function to scVelo
Provide prediction script which uses down-sampled data to predict RNA velocity and cell time on entire dataset
Add notebooks for auxiliary functions
Version 0.2.1
Support input of both raw path and adata objects
Fix bugs on logging file
Version 0.2.0
Beta version of UniTVelo released
Provide option of using gene counts for model initialization
Provide reference script for choosing unified-time mode or independent mode
Provide sampling script when dataset is oversized and GPU memory is bottleneck
Re-organize configuration file
Number of velocity genes can be amplified (an adjustable hyper-parameter) during optimization which allows post-analysis on more genes
Version 0.1.6
Fix bug for early stopping scenarios
Version 0.1.5
Fix bug in saving files
Add adjustable parameters for penalty in configuration file
Version 0.1.4
Add penalty on loss function
Support informative gene selection in unified-time mode
Version 0.1.3
Support CPU mode for model fitting
Fix bugs in documentations
Version 0.1.2
Fix bugs in setup.py
Add tutorials and documentations
Version 0.1.0
Alpha version of UniTVelo released